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To update Home Assistant Core installed in a python virtual environment (see Установка Home Assistant Core в виртуальное окружение python) you need to:
1. Stop the Home Assistant system service:
sudo systemctl stop home-assistant@$USER.service
where $USER is the login under which Home Assistant was installed
2. Go to the python virtual environment where Home Assistant Core was installed:
cd ~/homeassistant source bin/activate
3. Download updates:
pip3 install --upgrade homeassistant
4. Exit the python virtual environment and start the Home Assistant system service:
deactivate sudo systemctl start home-assistant@$USER.service